University of Pittsburgh recently issued the following announcement.
RNA-SEQ DATA ANALYSIS USING CLC GENOMICS WORKBENCH - IN-PERSON
June 15, 2022
This is a flipped class; links to PowerPoint slides, lecture videos, and practice exercises that you can view on your own schedule are available upon registration. During this in-person hands-on session, you will learn how to solve the exercise problems.
The workshop lecture video will walk you through the steps of a bulk RNA-seq data analysis process using the HSLS-licensed CLC Genomics Workbench. Participants will learn how to
- access the CLCbio Genomics Server hosted on the HTC Cluster by Pitt CRC
- import RNA-Seq FASTQ reads from a GEO dataset
- assess the quality of RNA-Seq data
- align reads to a reference genome
- estimate known gene and transcript expression
- perform differential expression analysis
- visualize data by generating PCA and heatmaps
Experimental biologists seeking to analyze bulk RNA-Seq data generated through experiments or retrieved from a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command-line interface is required.
Registration is required. Please register here.
Wednesday, June 15 at 11:00 a.m. to 1:00 p.m.
Falk Library of the Health Sciences, Classroom 2
200 Scaife Hall, Pittsburgh, PA 15261
EVENT TYPE
Trainings & Workshops, Virtual
TOPIC
Research, Technology, Continuing Education
TARGET AUDIENCE
Staff, Faculty, Graduate Students, Postdocs
TAGS
Health Sciences, HSLS, Molecular Biology, Catalog of Opportunities
WEBSITE
https://www.hsls.pitt.edu/instruction...
UNIVERSITY UNIT
Health Sciences Library System
HASHTAG
#HealthSciences
Original source can be found here.
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